Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Genes Targeted by hsa-mir-548m in MPM Mesothelioma Gordon Cluster 16 Table contains all genes in the MPM Mesothelioma Gordon cluster number 16. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-548m 56987 BBX bobby sox homolog (Drosophila) [Source:HGNC Symbol;Acc:14422] zzz999 4179 CD46 CD46 molecule, complement regulatory protein [Source:HGNC Symbol;Acc:6953] zzz999 10787 NCKAP1 NCK-associated protein 1 [Source:HGNC Symbol;Acc:7666] zzz999 27436 EML4 echinoderm microtubule associated protein like 4 [Source:HGNC Symbol;Acc:1316] zzz999 1968 EIF2S3 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa [Source:HGNC Symbol;Acc:3267] zzz999 1452 CSNK1A1 casein kinase 1, alpha 1 [Source:HGNC Symbol;Acc:2451] zzz999 65117 RSRC2 arginine/serine-rich coiled-coil 2 [Source:HGNC Symbol;Acc:30559] zzz999 102 ADAM10 ADAM metallopeptidase domain 10 [Source:HGNC Symbol;Acc:188] P T 8774 NAPG N-ethylmaleimide-sensitive factor attachment protein, gamma [Source:HGNC Symbol;Acc:7642] zzz999 7334 UBE2N ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast) [Source:HGNC Symbol;Acc:12492] zzz999 4999 ORC2 origin recognition complex, subunit 2 [Source:HGNC Symbol;Acc:8488] zzz999 55758 RCOR3 REST corepressor 3 [Source:HGNC Symbol;Acc:25594] P T 10959 TMED2 transmembrane emp24 domain trafficking protein 2 [Source:HGNC Symbol;Acc:16996] zzz999 116150 NUS1 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:21042] zzz999 23741 EID1 EP300 interacting inhibitor of differentiation 1 [Source:HGNC Symbol;Acc:1191] zzz999 5562 zzz999 5'-AMP-activated protein kinase catalytic subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q13131] T 10988 METAP2 methionyl aminopeptidase 2 [Source:HGNC Symbol;Acc:16672] T 523 ATP6V1A ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A [Source:HGNC Symbol;Acc:851] P T 8899 PRPF4B PRP4 pre-mRNA processing factor 4 homolog B (yeast) [Source:HGNC Symbol;Acc:17346] P T 5256 PHKA2 phosphorylase kinase, alpha 2 (liver) [Source:HGNC Symbol;Acc:8926] zzz999 2533 FYB FYN binding protein [Source:HGNC Symbol;Acc:4036] zzz999 11051 NUDT21 nudix (nucleoside diphosphate linked moiety X)-type motif 21 [Source:HGNC Symbol;Acc:13870] zzz999 11052 CPSF6 cleavage and polyadenylation specific factor 6, 68kDa [Source:HGNC Symbol;Acc:13871] T 5999 RGS4 regulator of G-protein signaling 4 [Source:HGNC Symbol;Acc:10000] zzz999 373 TRIM23 tripartite motif containing 23 [Source:HGNC Symbol;Acc:660] zzz999 51164 DCTN4 dynactin 4 (p62) [Source:HGNC Symbol;Acc:15518] zzz999 55156 ARMC1 armadillo repeat containing 1 [Source:HGNC Symbol;Acc:17684] zzz999 5934 RBL2 retinoblastoma-like 2 (p130) [Source:HGNC Symbol;Acc:9894] zzz999 22868 FASTKD2 FAST kinase domains 2 [Source:HGNC Symbol;Acc:29160] zzz999 23473 CAPN7 calpain 7 [Source:HGNC Symbol;Acc:1484] zzz999 7175 TPR translocated promoter region (to activated MET oncogene) [Source:HGNC Symbol;Acc:12017] P 58487 CREBZF CREB/ATF bZIP transcription factor [Source:HGNC Symbol;Acc:24905] T 25932 CLIC4 chloride intracellular channel 4 [Source:HGNC Symbol;Acc:13518] T 60496 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase [Source:HGNC Symbol;Acc:14235] zzz999 10927 SPIN1 spindlin 1 [Source:HGNC Symbol;Acc:11243] P T 9063 PIAS2 protein inhibitor of activated STAT, 2 [Source:HGNC Symbol;Acc:17311] zzz999 23451 SF3B1 splicing factor 3b, subunit 1, 155kDa [Source:HGNC Symbol;Acc:10768] zzz999 54499 TMCO1 transmembrane and coiled-coil domains 1 [Source:HGNC Symbol;Acc:18188] zzz999 5782 PTPN12 protein tyrosine phosphatase, non-receptor type 12 [Source:HGNC Symbol;Acc:9645] P T 57337 SENP7 SUMO1/sentrin specific peptidase 7 [Source:HGNC Symbol;Acc:30402] zzz999 659 BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) [Source:HGNC Symbol;Acc:1078] P T 23376 KIAA0776 KIAA0776 [Source:HGNC Symbol;Acc:23039] T 55284 UBE2W ubiquitin-conjugating enzyme E2W (putative) [Source:HGNC Symbol;Acc:25616] P T 6782 HSPA13 heat shock protein 70kDa family, member 13 [Source:HGNC Symbol;Acc:11375] T 10640 EXOC5 exocyst complex component 5 [Source:HGNC Symbol;Acc:10696] T 81555 YIPF5 Yip1 domain family, member 5 [Source:HGNC Symbol;Acc:24877] zzz999 5962 RDX radixin [Source:HGNC Symbol;Acc:9944] zzz999 3717 JAK2 Janus kinase 2 [Source:HGNC Symbol;Acc:6192] T 51068 NMD3 NMD3 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:24250] zzz999 1595 CYP51A1 cytochrome P450, family 51, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:2649] zzz999 7416 VDAC1 voltage-dependent anion channel 1 [Source:HGNC Symbol;Acc:12669] zzz999 11080 DNAJB4 DnaJ (Hsp40) homolog, subfamily B, member 4 [Source:HGNC Symbol;Acc:14886] T 9774 BCLAF1 BCL2-associated transcription factor 1 [Source:HGNC Symbol;Acc:16863] P T 23118 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 [Source:HGNC Symbol;Acc:17075] T 9604 RNF14 ring finger protein 14 [Source:HGNC Symbol;Acc:10058] T 150786 RAB6C RAB6C, member RAS oncogene family [Source:HGNC Symbol;Acc:16525] T 23710 GABARAPL1 GABA(A) receptor-associated protein like 1 [Source:HGNC Symbol;Acc:4068] T 7398 USP1 ubiquitin specific peptidase 1 [Source:HGNC Symbol;Acc:12607] zzz999 10105 PPIF peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259] zzz999 79692 ZNF322A zinc finger protein 322A [Source:HGNC Symbol;Acc:23640] T 11183 MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 [Source:HGNC Symbol;Acc:6867] zzz999 29058 C20orf30 chromosome 20 open reading frame 30 [Source:HGNC Symbol;Acc:15876] zzz999 51495 PTPLAD1 protein tyrosine phosphatase-like A domain containing 1 [Source:HGNC Symbol;Acc:24175] zzz999 5756 TWF1 twinfilin, actin-binding protein, homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:9620] zzz999 6118 RPA2 replication protein A2, 32kDa [Source:HGNC Symbol;Acc:10290] zzz999 5255 PHKA1 phosphorylase kinase, alpha 1 (muscle) [Source:HGNC Symbol;Acc:8925] zzz999 2551 GABPA GA binding protein transcription factor, alpha subunit 60kDa [Source:HGNC Symbol;Acc:4071] P T 10771 ZMYND11 zinc finger, MYND-type containing 11 [Source:HGNC Symbol;Acc:16966] P T 10098 TSPAN5 tetraspanin 5 [Source:HGNC Symbol;Acc:17753] zzz999 10772 SRSF10 serine/arginine-rich splicing factor 10 [Source:HGNC Symbol;Acc:16713] T 9530 BAG4 BCL2-associated athanogene 4 [Source:HGNC Symbol;Acc:940] zzz999 54989 ZNF770 zinc finger protein 770 [Source:HGNC Symbol;Acc:26061] P T 6249 CLIP1 CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:10461] P T 28951 TRIB2 tribbles homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:30809] zzz999 5529 PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform [Source:HGNC Symbol;Acc:9313] zzz999 9908 G3BP2 GTPase activating protein (SH3 domain) binding protein 2 [Source:HGNC Symbol;Acc:30291] zzz999 2653 GCSH glycine cleavage system protein H (aminomethyl carrier) [Source:HGNC Symbol;Acc:4208] zzz999 3187 HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) [Source:HGNC Symbol;Acc:5041] zzz999 10745 PHTF1 putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:8939] zzz999 9330 GTF3C3 general transcription factor IIIC, polypeptide 3, 102kDa [Source:HGNC Symbol;Acc:4666] zzz999 7184 HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 [Source:HGNC Symbol;Acc:12028] zzz999 10657 KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 [Source:HGNC Symbol;Acc:18116] P T 6731 SRP72 signal recognition particle 72kDa [Source:HGNC Symbol;Acc:11303] T 8287 USP9Y ubiquitin specific peptidase 9, Y-linked [Source:HGNC Symbol;Acc:12633] P T 9097 USP14 ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) [Source:HGNC Symbol;Acc:12612] P T 2618 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase [Source:HGNC Symbol;Acc:4163] zzz999 1997 ELF1 E74-like factor 1 (ets domain transcription factor) [Source:HGNC Symbol;Acc:3316] zzz999 51241 COX16 COX16 cytochrome c oxidase assembly homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20213] zzz999 55236 UBA6 ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:25581] T 11102 RPP14 ribonuclease P/MRP 14kDa subunit [Source:HGNC Symbol;Acc:30327] T 1295 COL8A1 collagen, type VIII, alpha 1 [Source:HGNC Symbol;Acc:2215] zzz999 7812 CSDE1 cold shock domain containing E1, RNA-binding [Source:HGNC Symbol;Acc:29905] zzz999 9166 EBAG9 estrogen receptor binding site associated, antigen, 9 [Source:HGNC Symbol;Acc:3123] zzz999 81537 SGPP1 sphingosine-1-phosphate phosphatase 1 [Source:HGNC Symbol;Acc:17720] P T 3799 KIF5B kinesin family member 5B [Source:HGNC Symbol;Acc:6324] zzz999 3796 KIF2A kinesin heavy chain member 2A [Source:HGNC Symbol;Acc:6318] P T 4149 MAX MYC associated factor X [Source:HGNC Symbol;Acc:6913] zzz999 55149 MTPAP mitochondrial poly(A) polymerase [Source:HGNC Symbol;Acc:25532] zzz999 11018 TMED1 transmembrane emp24 protein transport domain containing 1 [Source:HGNC Symbol;Acc:17291] zzz999 5621 PRNP prion protein [Source:HGNC Symbol;Acc:9449] T 23325 KIAA1033 KIAA1033 [Source:HGNC Symbol;Acc:29174] T 55669 MFN1 mitofusin 1 [Source:HGNC Symbol;Acc:18262] zzz999 25800 SLC39A6 solute carrier family 39 (zinc transporter), member 6 [Source:HGNC Symbol;Acc:18607] zzz999 10565 ARFGEF1 ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) [Source:HGNC Symbol;Acc:15772] zzz999 54107 POLE3 polymerase (DNA directed), epsilon 3 (p17 subunit) [Source:HGNC Symbol;Acc:13546] zzz999 686 BTD biotinidase [Source:HGNC Symbol;Acc:1122] zzz999 2886 GRB7 growth factor receptor-bound protein 7 [Source:HGNC Symbol;Acc:4567] zzz999 57446 NDRG3 NDRG family member 3 [Source:HGNC Symbol;Acc:14462] zzz999 3998 LMAN1 lectin, mannose-binding, 1 [Source:HGNC Symbol;Acc:6631] zzz999 56681 SAR1A SAR1 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:10534] zzz999 10426 TUBGCP3 tubulin, gamma complex associated protein 3 [Source:HGNC Symbol;Acc:18598] T 6729 SRP54 signal recognition particle 54kDa [Source:HGNC Symbol;Acc:11301] zzz999 9180 OSMR oncostatin M receptor [Source:HGNC Symbol;Acc:8507] T

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